Income Tax Reporting for Ministers — 2026 Filing Season Guide (2025 Income)
Ministers file taxes under unique dual rules — they are employees for income-tax purposes but self-employed for Social Security (SECA).
This 2026 Filing Season guide (covering 2025 income) explains how clergy report income on Form 1040 and Schedule SE, manage voluntary withholding or estimated tax, and apply the latest 2025 law changes from the One Big Beautiful Bill Act (OBBBA) and IRS updates.
1️⃣ Filing Requirements for 2025 Income
For the 2026 tax season (reporting 2025 income), the filing thresholds reflect OBBBA inflation adjustments and the new Senior Deduction.
- Single / MFS: $15,750 gross income or more
- Married Filing Jointly / Qualifying Widow(er): $31,500 or more
- Head of Household: $23,625 or more
- Additional Senior Deduction: $6,000 per taxpayer age 65 or older
Ministers must file even below these amounts if they have ≥ $400 net self-employment earnings and no Form 4361 exemption.
Churches electing out of FICA via Form 8274 may trigger SECA filing if wages ≥ $108.28.
2️⃣ Withholding vs Estimated Payments
Churches generally do not withhold income tax for ministers’ services, so most clergy must remit quarterly estimated tax (Form 1040-ES) to cover both income and SE tax.
Payments are required if expected combined tax due exceeds $1,000.
Ministers may sign a voluntary withholding agreement with their church to have income tax withheld.
It does not cover Social Security tax but simplifies budgeting and avoids estimated-tax penalties.
3️⃣ W-2, Schedule C and Schedule SE Reporting
Ministers usually receive a W-2 showing their salary but no FICA withholding. They compute and pay the 15.3% SE tax on Schedule SE.
Non-employee fees (guest preaching, seminars) go on Schedule C.
If Form 4361 exemption is pending, SE tax still applies until approved.
Rev. M receives $60 000 salary and a $20 000 housing allowance (Box 14).
Income tax applies to $60 000 only, but SE tax is calculated on $80 000 (salary + housing).
If Form 4361 is approved, no SE tax is owed on that income.
4️⃣ Deductions and Adjustments for Clergy
- Ordinary and necessary ministry expenses — books, travel, education, professional supplies.
- Self-Employed Health Insurance Deduction (Schedule 1, line 17).
- ½ of SE tax deduction (Schedule 1, line 15).
Expenses tied to tax-free income (such as housing allowance) are not deductible. Keep detailed records for mixed expenses.
5️⃣ 2025 Return Examples
Minister N earns $45 000 salary + $15 000 housing allowance and spends $14 000 on housing and $3 500 in deductible expenses.
→ Income tax base = $45 000 only (housing exempt).
→ SE tax base = ($45 000 + $15 000 − $3 500) = $56 500.
Keep mileage logs and receipts for conferences and visitation travel.
2025 standard mileage rate is 70 ¢ per mile.
💬 Frequently Asked Questions
Q1. Is withholding required for ministers? → ❌ No, but voluntary agreements are allowed.
Q2. If I have Form 4361 exemption, do I still file Schedule SE? → ❌ No, write “Exempt – Form 4361” on Schedule 2 (Form 1040), line 4.
Q3. Does housing allowance go on Schedule C? → ❌ No, it belongs on W-2 (Box 14) and is excluded from income if designated in advance.
Reference Links
- IRS Publication 517 — Clergy Income & SE Tax (2025)
- IRS Form 1040 & Schedule SE Instructions (2026 filing)
- Do You Have to Pay Back Medicaid Benefits If Your Income Increases?
- Understanding Form 8606
📗 Church & Ministry Tax Series (2025)
- ① How Churches Qualify for 501(c)(3)
- ② Can Churches Lose Their 501(c)(3)?
- ③ Can Your Church Talk Politics?
- ④ UBIT and Reporting Rules
- ⑤ Minister Compensation & Housing Allowance
- ⑥ Social Security & SE Tax for Clergy
- ⑦ Income Tax Reporting for Ministers
- ⑧ Retirement & IRA Rules for Ministers
- ⑨ Charitable Contribution Regulations (This Post)
- ⑩ Church Audits & IRS Examinations